A B C D E F G H I K L M N O P R S T U V W X Y

A

ALL_SINGLE_EVENTS - Static variable in interface edu.uci.ics.jung.graph.event.GraphEventType

AbstractArchetypeGraph - class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph.

AbstractArchetypeGraph() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph

AbstractHyperUnitBPG - class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG.

A support class for both HyperedgeBPG and HyperVertexBPG, this represents a single object backed by a BipartiteVertex that is a member of a HypergraphBPG.

AbstractHyperUnitBPG() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG

AbstractLayout - class edu.uci.ics.jung.visualization.AbstractLayout.

Implements some of the dirty work of writing a layout algorithm, allowing the user to express their major intent more simply.

AbstractLayout(Graph) - Constructor for class edu.uci.ics.jung.visualization.AbstractLayout

Constructor.

AbstractRanker - class edu.uci.ics.jung.algorithms.importance.AbstractRanker.

Abstract class for algorithms that rank nodes or edges by some "importance" metric.

AbstractRanker() - Constructor for class edu.uci.ics.jung.algorithms.importance.AbstractRanker

AbstractRenderer - class edu.uci.ics.jung.visualization.AbstractRenderer.

This abstract class structures much of the annoying bits of Renderers, allowing the user to simply override the important methods and move on.

AbstractRenderer() - Constructor for class edu.uci.ics.jung.visualization.AbstractRenderer

AbstractSparseEdge - class edu.uci.ics.jung.graph.impl.AbstractSparseEdge.

This class provides a skeletal implementation of the Edge interface to minimize the effort required to implement this interface.

AbstractSparseEdge(Vertex, Vertex) - Constructor for class edu.uci.ics.jung.graph.impl.AbstractSparseEdge

Creates an edge connecting vertices from and to.

AbstractSparseGraph - class edu.uci.ics.jung.graph.impl.AbstractSparseGraph.

This class provides a skeletal implementation of the Graph interface to minimize the effort required to implement this interface.

AbstractSparseGraph() - Constructor for class edu.uci.ics.jung.graph.impl.AbstractSparseGraph

Creates an instance of a sparse graph.

AbstractSparseVertex - class edu.uci.ics.jung.graph.impl.AbstractSparseVertex.

This class provides a skeletal implementation of the Vertex interface to minimize the effort required to implement this interface.

AlphabeticVertexFilter - class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter.

A small example filter that accepts vertices that are alphabetically past the input value.

AlphabeticVertexFilter(String, StringLabeller, boolean) - Constructor for class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter

ArchetypeEdge - interface edu.uci.ics.jung.graph.ArchetypeEdge.

A interface for edge implementations in generalized graphs.

ArchetypeGraph - interface edu.uci.ics.jung.graph.ArchetypeGraph.

A generalized graph which consists of an ArchetypeVertex set and an ArchetypeEdge set.

ArchetypeVertex - interface edu.uci.ics.jung.graph.ArchetypeVertex.

A interface for vertex implementations in generalized graphs.

Arrow - class edu.uci.ics.jung.visualization.contrib.Arrow.

This pluggable utility paints either a "classic" or a "sleek" filled arrow on a given edge.

Arrow(String, int, int) - Constructor for class edu.uci.ics.jung.visualization.contrib.Arrow

acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.EdgePredicateFilter

acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.GeneralEdgeAcceptFilter

Determines whether the current edge should be accepted into the Graph.

acceptEdge(Edge) - Method in class edu.uci.ics.jung.graph.filters.impl.WeightedEdgeGraphFilter

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.GeneralVertexAcceptFilter

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.TrivialFilter

Returns true for all vertices.

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.VertexPredicateFilter

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.AlphabeticVertexFilter

Passes the vertex if its StringLabeller value compares over (or under) the threshold.

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.DropSoloNodesFilter

acceptVertex(Vertex) - Method in class edu.uci.ics.jung.graph.filters.impl.NumericDecorationFilter

accumulate(double) - Method in class edu.uci.ics.jung.statistics.StatisticalMoments

statistical moment accumulation up to order 4.

add(double) - Method in class edu.uci.ics.jung.utils.MutableDouble

Increases the double's value by value.

add(double) - Method in class edu.uci.ics.jung.utils.MutableInteger

Increases the int's value by value.

add(double, double) - Method in class edu.uci.ics.jung.visualization.Coordinates

Increases the x and y values of this scalar by (x, y).

addBipartiteEdge(BipartiteEdge) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph

Adds a BipartiteEdge to the Graph.

addCluster(Set) - Method in class edu.uci.ics.jung.algorithms.cluster.ClusterSet

Adds a new cluster to the collection.

addDirectedVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Deprecated. As of version 1.2, replaced by GraphUtils.addVertices(edu.uci.ics.jung.graph.Graph, int).

addDocument(CiviDocument) - Method in class org.civi.graph.GraphModeler

addEdge(Edge) - Method in interface edu.uci.ics.jung.graph.Graph

Adds e to this graph, and returns a reference to the added vertex.

addEdge(Hyperedge) - Method in interface edu.uci.ics.jung.graph.Hypergraph

addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseGraph

addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph

Deprecated. Use addBipartiteEdge

addEdge(Hyperedge) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG

Adds a single edge to the graph

addEdge(Edge) - Method in class edu.uci.ics.jung.graph.impl.SparseTree

addEdge(Graph, Vertex, Vertex) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Adds an appropriate edge between two vertices.

addEdge(Vertex, Vertex, float) - Method in class org.civi.graph.GraphModeler

addEdgeSubset(ArchetypeGraph, Predicate) - Static method in class edu.uci.ics.jung.utils.PredicateUtils

Creates an edge subset for g based on p, which will be maintained by the g's SubsetManager.

addEdgeSubset(Predicate) - Method in class edu.uci.ics.jung.utils.SubsetManager

Creates an edge subset based on p.

addGraphMouseListener(GraphMouseListener) - Method in class edu.uci.ics.jung.visualization.GraphDraw

This is the interface for adding a mouse listener.

addKeyword(CiviKeyword) - Method in class org.civi.graph.GraphModeler

addListener(GraphEventListener, GraphEventType) - Method in interface edu.uci.ics.jung.graph.ArchetypeGraph

Tells the graph to add gel as a listener for changes in the graph structure

addListener(GraphEventListener, GraphEventType) - Method in class edu.uci.ics.jung.graph.event.GraphListenerHandler

addListener(GraphEventListener, GraphEventType) - Method in class edu.uci.ics.jung.graph.impl.AbstractArchetypeGraph

addSlider(LevelFilter, int, int, int) - Method in class edu.uci.ics.jung.visualization.GraphDraw

Creates a new slider based off of a LevelFilter.

addStaticFilter(Filter) - Method in class edu.uci.ics.jung.visualization.GraphDraw

Adds a Filter that doesn't slide.

addTool(JComponent) - Method in class edu.uci.ics.jung.visualization.GraphDraw

Adds a tool to the toolbar.

addUndirectedVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Deprecated. As of version 1.2, replaced by GraphUtils.addVertices(edu.uci.ics.jung.graph.Graph, int).

addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.impl.AbstractHyperUnitBPG

addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG

addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in class edu.uci.ics.jung.utils.UserData

Adds user-level information to the node.

addUserDatum(Object, Object, UserDataContainer.CopyAction) - Method in interface edu.uci.ics.jung.utils.UserDataContainer

Adds the specified data with the specified key to this object's user data repository, with the specified CopyAction.

addVertex(Vertex) - Method in interface edu.uci.ics.jung.graph.Graph

Adds v to this graph, and returns a reference to the added vertex.

addVertex(Hypervertex) - Method in interface edu.uci.ics.jung.graph.Hyperedge

addVertex(Hypervertex) - Method in interface edu.uci.ics.jung.graph.Hypergraph

addVertex(Vertex) - Method in class edu.uci.ics.jung.graph.impl.AbstractSparseGraph

addVertex(BipartiteVertex, BipartiteGraph.Choice) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph

Adds a single vertex to the graph in the specified partition.

addVertex(Vertex) - Method in class edu.uci.ics.jung.graph.impl.BipartiteGraph

Deprecated. Use addBipartiteVertex

addVertex(Hypervertex) - Method in class edu.uci.ics.jung.graph.impl.HyperedgeBPG

Registers an additional vertex hv3_x onto this Edge.

addVertex(Hypervertex) - Method in class edu.uci.ics.jung.graph.impl.HypergraphBPG

addVertexSubset(ArchetypeGraph, Predicate) - Static method in class edu.uci.ics.jung.utils.PredicateUtils

Creates a vertex subset for g based on p, which will be maintained by the g's SubsetManager.

addVertexSubset(Predicate) - Method in class edu.uci.ics.jung.utils.SubsetManager

Creates a vertex subset based on p.

addVertices(Graph, int) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Adds count vertices into a graph.

addX(double) - Method in class edu.uci.ics.jung.visualization.Coordinates

Increases the x value by d.

addY(double) - Method in class edu.uci.ics.jung.visualization.Coordinates

Increases the y value by d.

adjustForGravity() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout

Shift all vertices so that the center of gravity is located at the center of the screen.

adjustForGravity() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayoutInt

Shift all vertices so that the center of gravity is located at the center of the screen.

advancePositions() - Method in class edu.uci.ics.jung.visualization.AbstractLayout

Implementors must override this method in order to create a Layout.

advancePositions() - Method in class edu.uci.ics.jung.visualization.FRLayout

Moves the iteration forward one notch, calculation attraction and repulsion between vertices and edges and cooling the temperature.

advancePositions() - Method in class edu.uci.ics.jung.visualization.FadingVertexLayout

In addition to being a passthrough, this also advances the fade function by calling tick

advancePositions() - Method in class edu.uci.ics.jung.visualization.ISOMLayout

Advances the current positions of the graph elements.

advancePositions() - Method in interface edu.uci.ics.jung.visualization.Layout

Advances an incremental visualization.

advancePositions() - Method in class edu.uci.ics.jung.visualization.SpringLayout

advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.CircleLayout

Do nothing.

advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayout

advancePositions() - Method in class edu.uci.ics.jung.visualization.contrib.KKLayoutInt

append(Filter) - Method in class edu.uci.ics.jung.graph.filters.SerialFilter

Adds a filter to the end of the sequence of filters.

applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.AbstractLayout

Applies the filter to the current graph.

applyFilter(Graph) - Method in class edu.uci.ics.jung.visualization.FadingVertexLayout

Tracks the changes in the set of visible vertices from the set of actual vertices.

applyFilter(Graph) - Method in interface edu.uci.ics.jung.visualization.Layout

Sets this filtered graph to be the applicable graph.

areEquivalent(ArchetypeGraph, ArchetypeGraph) - Static method in class edu.uci.ics.jung.utils.GraphUtils

Returns true if g1 and g2 have equivalent vertex and edge sets (that is, if each vertex and edge in g1 has an equivalent in g2, and vice versa), and false otherwise.

assemble(boolean) - Method in class edu.uci.ics.jung.graph.filters.UnassembledGraph

Constructs a new graph based on the source graph.

assemble() - Method in class edu.uci.ics.jung.graph.filters.UnassembledGraph

assignDefaultLabels(Set, int) - Method in class edu.uci.ics.jung.graph.decorators.StringLabeller

Assigns textual labels to every vertex passed in.

assignDefaultLabels(Set, int) - Method in class edu.uci.ics.jung.graph.decorators.ToStringLabeller

This method is not meaningful; it throws an IllegalArgumentException

average() - Method in class edu.uci.ics.jung.statistics.Histogram

Returns the average of the values accumulated in the histogram bins.

average() - Method in class edu.uci.ics.jung.statistics.StatisticalMoments

averageDistances(Graph) - Static method in class edu.uci.ics.jung.statistics.GraphStatistics

The set of average shortest path distances for each vertex.